Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SKCM rs3738943 chr2:180846743 G/T 2.92E-5 101 9 13.72 15.3 KM Plot
SKCM rs3741398 chr11:64546106 C/T 6.62E-7 100 14.73 15.73 8.8 KM Plot
SKCM rs3749615 chr5:601485 C/T 0 99 15.02 13.4 6.33 KM Plot
SKCM rs3749618 chr5:602650 A/G 0 100 15.02 14.8 6.33 KM Plot
SKCM rs3768837 chr2:180835792 T/A 2.92E-5 101 9 13.72 15.3 KM Plot
SKCM rs3768839 chr2:180835992 G/A 2.92E-5 101 9 13.72 15.3 KM Plot
SKCM rs377391799 chr11:64479438 ACT/A 4.01E-7 101 14.67 16.33 8.8 KM Plot
SKCM rs3786650 chr19:56169208 T/C 4.82E-6 96 14.05 21.33 9 KM Plot
SKCM rs3809076 chr11:64482546 G/A 4.9E-7 100 14.43 16.33 8.8 KM Plot
SKCM rs3831742 chr11:64543514 T/TTC 7.7E-7 99 8.8 15.73 14.67 KM Plot
SKCM rs3842316 chr14:100910886 TGGCCCCA/T 0.000106 100 12.27 16.35 15.13 KM Plot
SKCM rs3845695 chr2:180796989 A/G 3.34E-5 100 9 13.72 15.13 KM Plot
SKCM rs3845697 chr2:180798553 C/T 3.07E-5 101 15.13 13.8 9 KM Plot
SKCM rs3914458 chr2:180862606 A/G 3.03E-5 100 9 14.23 15.13 KM Plot
SKCM rs4076886 chr8:143419801 A/C 7.81E-5 99 15.63 15.57 10.87 KM Plot